If your RAG (Retrieval-Augmented Generation) is stuck on specific samples, it could be due to several issues. Here’s a step-by-step debugging guide to fix it.
✅ Check if FAISS is retrieving the same fixed results
You can inspect what FAISS is actually returning by adding debug logs:
D, I = index.search(np.array(query_embedding, dtype=np.float32), k=5)
print("Retrieved Indexes:", I)
print("Retrieved Distances:", D)
If FAISS always returns the same indices, then:
- The embeddings might not be unique.
- FAISS might not be correctly reloading the index.
If your FAISS index is outdated or corrupt, try rebuilding it:
# Assuming 'texts' is your dataset of retrieved documents
embeddings = np.array([embedding_model.encode(text) for text in texts]).astype('float32')
index = faiss.IndexFlatL2(embeddings.shape[1]) # L2 similarity search
✅ Now, new embeddings will be indexed, avoiding old stuck results.
If your rag_wrapper() always returns the same context, it might be:
- Using cached responses.
- Not refreshing the retrieved documents.
✅ Check What the RAG Wrapper is Returning
Modify this part:
scientific_context = rag_wrapper(query="Your Query", mode="scientific", raw_output=True)
diary_context = rag_wrapper(query="Your Query", mode="diary", raw_output=True)
print("Scientific Context Retrieved:", scientific_context)
print("Diary Context Retrieved:", diary_context)
🚀 If these are stuck on old values, the retrieval function is not updating!
Modify rag_wrapper() to disable caching and fetch fresh data:
def rag_wrapper(query, mode="scientific", raw_output=False, force_refresh=True):
# Force fresh retrieval if needed
refresh_rag_index() # Custom function to clear outdated retrievals
retrieved_docs = faiss_retrieve(query, mode)
return retrieved_docs # Return full documents
return "\n".join(retrieved_docs)
✅ This ensures the retrieval system fetches fresh documents.
If different queries return the same results, your embeddings might be too similar.
✅ Debug Your Query Embeddings
Print out your embeddings for different queries:
query1 = "How does climate change affect trees?"
query2 = "Tree growth and temperature changes"
embedding1 = embedding_model.encode(query1)
embedding2 = embedding_model.encode(query2)
similarity = np.dot(embedding1, embedding2) / (np.linalg.norm(embedding1) * np.linalg.norm(embedding2))
print("Query Similarity:", similarity)
⚠️ If the similarity is too high (close to 1.0), FAISS sees them as the same.
Try adding a unique identifier to queries to differentiate them:
query_embedding = embedding_model.encode(["[SCIENTIFIC] " + query])
✅ This improves FAISS ranking and retrieval precision.
Sometimes FAISS retrieves the right documents but cuts them off or doesn’t format them properly.
✅ Check How Many Results FAISS is Returning
Modify:
print("Retrieved Texts:", scientific_context, diary_context)
If the output is truncated, FAISS might be cutting off results.
Increase the k value to retrieve more diverse results:
retrieved_texts = simple_faiss_retrieval(query, index, texts, embedding_model, min_k=5, max_k=7)
✅ This forces FAISS to return 5-7 different results instead of being stuck on 3.
If scientific_context or diary_context is empty, check:
print("Step 4 - Scientific Context:", data["scientific_context"])
print("Step 4 - Diary Context:", data["diary_context"])
⚠️ If either is empty or incorrect, something is breaking in the RAG pipeline.
Modify the return statement to force proper data forwarding:
"Step 4 - RAG Results:\n"
f"Scientific Context ({len(data['scientific_context'])} texts):\n{'\n'.join(data['scientific_context'])}\n"
f"Diary Context ({len(data['diary_context'])} texts):\n{'\n'.join(data['diary_context'])}"
"persona": f"{data['persona']}\n\nScientific Knowledge:\n{'\n'.join(data['scientific_context'])}\n\nDiary Insights:\n{'\n'.join(data['diary_context'])}",
"scientific_context": data["scientific_context"],
"diary_context": data["diary_context"]
✅ This ensures the correct results are used for the next step.
✔ Check FAISS retrieval:
print("Retrieved Indexes:", I)
print("Retrieved Distances:", D)
✔ Check if the RAG wrapper is updating:
print("Scientific Context Retrieved:", scientific_context)
✔ Ensure queries are distinct:
print("Query Similarity:", similarity)
✔ Increase FAISS k to get more results:
retrieved_texts = simple_faiss_retrieval(query, index, texts, embedding_model, min_k=5, max_k=7)
- If FAISS is still stuck, we might need to rebuild the embeddings.
- If retrieval works but RAG still fails, check if LangChain or another LLM is overwriting results.
Would you like me to guide you through testing FAISS more deeply? 🚀